As the leaves turn golden and the air turns crisp, I find myself drawn to heartwarming flavors that echo the essence of fall. That’s why I’m thrilled to share my cozy Butternut Squash Apple Bake—a seasonal delight that combines the nutty sweetness of roasted butternut squash with the tartness of firm, juicy apples. This recipe not only simplifies weeknight cooking but also makes for a stunning side dish that can accompany festive feasts or casual family dinners. With just a handful of ingredients, you can create a gluten-free and healthy comfort dish that wraps you in a warm embrace. Are you ready to fill your kitchen with the enchanting aroma of cinnamon and nutmeg? Let’s dive into this easy and wholesome bake!

Why is This Bake So Irresistible?
Comforting Flavors: The sticky-sweet combination of butternut squash and apples creates a soothing flavor profile that warms the soul, making it the perfect fall dish.
Healthy Indulgence: Gluten-free and packed with vitamins, this bake lets you enjoy wholesome comfort food with fewer worries.
Easy Preparation: With only a few steps, you can whip this up in no time, leaving more moments for cozy chats or setting the table.
Versatile Pairings: It pairs beautifully with roasted turkey or a plant-based main, making it a versatile addition to any meal, from casual dinners to festive gatherings.
Elevate your fall menu with this undeniable comfort alongside other seasonal favorites like Sticky Apple Cider or Apple Cider Pork.
Butternut Squash Apple Bake Ingredients
For the Bake
• Butternut Squash – Adds nutty sweetness and caramelizes beautifully; substitute acorn squash or sweet potatoes if needed.
• Firm Apples (Granny Smith or Honeycrisp) – Offers a balanced sweetness and tartness while holding their shape during baking; Fuji apples can also work.
• Butter (or Coconut Oil) – Provides richness and aids in the caramelization process; for a dairy-free option, use coconut oil or vegan butter.
• Cinnamon – Delivers warmth to the dish without being overpowering; consider a pinch of cloves for an extra flavor note.
• Nutmeg – Complements the cinnamon, enhancing the cozy fall flavor profile.
• Maple Syrup (optional) – Naturally enhances sweetness; honey can be used as a substitute if desired.
• Salt and Pepper – Essential for balancing flavors throughout the dish.
Now that you have all the ingredients ready, you’re just a few steps away from creating your own Butternut Squash Apple Bake that will fill your home with enticing aromas and comfort!
Step‑by‑Step Instructions for Butternut Squash Apple Bake
Step 1: Preheat Oven and Prep Dish
Begin by preheating your oven to 375°F (190°C). While the oven warms, lightly grease a 9×13-inch baking dish with butter or coconut oil to help prevent sticking. This simple preparation sets the stage for a cozy butternut squash apple bake that will soon fill your kitchen with delightful aromas.
Step 2: Prepare Ingredients
Peel and cube the butternut squash into uniform 1-inch pieces to ensure even cooking. Meanwhile, core the apples and slice them into wedges; peeling is optional based on your preference. The combination of diced squash and apple slices creates a beautiful medley that enhances the flavors in your bake.
Step 3: Combine and Toss
In a large mixing bowl, combine the cubed butternut squash and apple wedges. Drizzle the mixture with melted butter and sprinkle in the cinnamon, nutmeg, salt, pepper, and optional maple syrup. Gently toss everything together, ensuring every piece is coated in the rich, aromatic blend that will elevate your butternut squash apple bake to new heights.
Step 4: Bake
Transfer the well-coated mixture into your greased baking dish, spreading it evenly. Bake uncovered in the preheated oven for 40-45 minutes, stirring halfway through. You’ll know it’s ready when the butternut squash is fork-tender, and the apples are soft yet holding their shape, forming a warm, caramelized dish.
Step 5: Serve
Once out of the oven, let your butternut squash apple bake cool slightly before serving. For an optional touch, garnish with fresh thyme or chopped pecans, adding an extra layer of flavor and texture. Enjoy this cozy dish warm, perfect for a comforting fall meal or festive gatherings.

Butternut Squash Apple Bake Variations
Feel free to make this delightful bake your own by adding your favorite flavors and textures!
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Nutty Crunch: Toss in chopped pecans or walnuts for a satisfying crunch and an extra layer of richness.
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Cheesy Goodness: Add shredded parmesan or goat cheese before baking for a delightful cheesy twist that melts into the dish.
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Spicy Kick: Sprinkle in a pinch of cayenne or chili flakes for a subtle heat that pairs beautifully with the sweetness of the squash and apples.
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Vegan Delight: Swap butter for olive oil or coconut oil to make this dish vegan-friendly while keeping it rich and flavorful.
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Sweeten the Deal: Use honied maple syrup instead of regular maple syrup for a deeper, more complex sweetness that enhances the fall flavors.
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Herbal Infusion: Stir in caramelized onions and rosemary instead of cinnamon for a savory twist that adds depth and complexity to this comforting bake.
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Pumpkin Spice Upgrade: Add pumpkin spice instead of cinnamon and nutmeg for a cozy fall twist that embodies the essence of the season.
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Citrus Burst: Drizzle with a bit of fresh orange juice or zest for a bright, fruity flavor that complements the sweetness of the dish beautifully.
As you experiment with these variations, don’t forget to check out other seasonal delights like Apple Breakfast Bake or Apple Goat Cheese for inspiration! Enjoy your kitchen adventures!
Make Ahead Options
Preparing your Butternut Squash Apple Bake in advance is a fantastic way to save time during busy weeknights! You can chop the butternut squash and apples up to 24 hours in advance, storing them in an airtight container in the refrigerator to maintain freshness and prevent browning. Additionally, you can mix the squash and apples with the spices and butter and refrigerate the mixture for an easy, ready-to-bake option up to 3 days ahead. When you’re ready to serve, simply transfer the mixture to a baking dish and follow the baking instructions as specified. This makes it incredibly easy to whip up a comforting, homemade dish with minimal effort, perfect for those fall gatherings!
How to Store and Freeze Butternut Squash Apple Bake
Fridge: Store leftovers in an airtight container for up to 3-4 days. This gluten-free dish maintains its delicious flavor and texture when properly sealed.
Freezer: Freeze the Butternut Squash Apple Bake in a freezer-friendly container for up to 2 months. Allow it to cool completely before wrapping for best results.
Reheating: When ready to enjoy, reheat directly from frozen at 350°F (175°C) for about 30-40 minutes, or until heated through. Cover with foil to retain moisture.
Serving Size: If you’ve made a larger batch, portion them into individual servings before freezing to easily thaw and enjoy on busy nights.
What to Serve with Butternut Squash Apple Bake
As the tantalizing warmth of cinnamon fills the air, you’ll want to enhance your cozy meal experience with delightful pairings.
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Roasted Turkey: This classic pairs beautifully; the savory flavors complement the sweet and spiced elements of the bake.
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Grilled Chicken: Tender and juicy, grilled chicken’s mild flavors create a delicious contrast, making for a well-rounded meal.
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Green Salad: A fresh arugula or spinach salad with a light vinaigrette adds crispness and balances the richness of the dish.
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Quinoa Pilaf: Earthy quinoa loaded with herbs provides both texture and nutrition, making it a wholesome side option.
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Baked Brie: Serve warm baked brie alongside for a decadent touch; the creamy cheese spreads beautifully over the butternut squash.
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Maple-Glazed Carrots: Sweet, caramelized carrots harmonize with the flavors of the bake and bring vibrant color to your plate.
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Sparkling Cider: An effervescent sparkling cider or a light white wine enhances the cozy autumn vibes, lifting the overall meal experience.
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Gingerbread Cookies: For a sweet finish, serve gingerbread cookies; their warm spices align perfectly with the warming flavors of the bake.
These pairings promise to elevate your Butternut Squash Apple Bake experience, creating a complete and comforting autumn meal.
Expert Tips for Butternut Squash Apple Bake
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Uniform Cubes: Ensure your butternut squash is cut into even 1-inch pieces for consistent cooking and that delightful caramelization in your Butternut Squash Apple Bake.
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Choose the Right Apples: Opt for firm apples like Granny Smith or Honeycrisp as they hold their shape during baking; softer varieties will turn mushy.
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Watch the Bake Time: Keep an eye on your dish, as oven temperatures can vary; test the squash for fork-tenderness around the 40-minute mark.
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Customize Your Flavor: Feel free to drizzle in some maple syrup for added sweetness or swap in coconut oil for a dairy-free version without losing richness.
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Layered Textures: Enhance your final dish’s texture by topping it with toasted pecans or walnuts, adding a satisfying crunch to the warm, tender bake.

Butternut Squash Apple Bake Recipe FAQs
How do I choose the best butternut squash?
Absolutely! When selecting butternut squash, look for firm, smooth skin without any dark spots or blemishes. The squash should feel heavy for its size, and a rich, tan color indicates ripeness. If stored properly, it can last for several weeks in a cool, dark place.
What’s the best way to store leftovers of Butternut Squash Apple Bake?
Leftovers can be stored in an airtight container in the refrigerator for up to 3-4 days. When reheating, cover it and warm it in a 325°F (160°C) oven for about 20 minutes, allowing the flavors to meld even further!
Can I freeze Butternut Squash Apple Bake?
Yes! To freeze, let the bake cool completely, then transfer it to a freezer-safe container. It will keep well for up to 2 months. When you’re ready to enjoy, reheat from frozen at 350°F (175°C) for about 30-40 minutes, covered with foil to maintain moisture.
What if my bake turns out mushy?
If your Butternut Squash Apple Bake turns out mushy, it might be due to overcooking or cutting the squash too small. To prevent this, ensure your squash cubes are cut evenly into 1-inch pieces, which allows them to cook evenly. Also, keep an eye on the bake time to achieve that perfect fork-tender texture without losing firmness.
Can I adjust the recipe for dietary restrictions?
Very much! This recipe is already gluten-free. For a dairy-free version, simply substitute butter with coconut oil or vegan butter. If you have allergies to nuts, feel free to skip any nuts or add seeds instead. It’s all about making this dish your own while enjoying its flavorful goodness.

Butternut Squash Apple Bake – Your Cozy Fall Favorite
Ingredients
Equipment
Method
- Preheat your oven to 375°F (190°C) and lightly grease a 9x13-inch baking dish with butter or coconut oil.
- Peel and cube the butternut squash into uniform 1-inch pieces. Core the apples and slice them into wedges.
- In a large mixing bowl, combine the cubed butternut squash and apple wedges. Drizzle with melted butter and sprinkle with cinnamon, nutmeg, salt, pepper, and maple syrup. Gently toss to coat.
- Transfer the mixture into the greased baking dish and spread it evenly. Bake uncovered for 40-45 minutes, stirring halfway through, until fork-tender.
- Let the bake cool slightly before serving. Optionally garnish with fresh thyme or chopped pecans.

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